MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Lactobacillus murinus
LAC.1
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 225
bases: 2,084,440 bps
CDS: 1,985
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 63
misc RNA:
Total features: 2,059
Total number of protein coding genes annotated/found:
1,985
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Items 1 - 20
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Molecule
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5005|JADGKI010000117.1
SEQF5005_00739
Genome Viewer
NA
AA
1188/396
248-1435
HTH-type transcriptional activator RhaR
SEQF5005|JADGKI010000117.1
SEQF5005_00740
Genome Viewer
NA
AA
522/174
2014-1493
putative protein YacP
SEQF5005|JADGKI010000117.1
SEQF5005_00741
Genome Viewer
NA
AA
741/247
2757-2017
Putative TrmH family tRNA/rRNA methyltransferase
SEQF5005|JADGKI010000117.1
SEQF5005_00742
Genome Viewer
NA
AA
396/132
3152-2757
Mini-ribonuclease 3
SEQF5005|JADGKI010000117.1
SEQF5005_00743
Genome Viewer
NA
AA
1410/470
4563-3154
Cysteine--tRNA ligase
SEQF5005|JADGKI010000117.1
SEQF5005_00744
Genome Viewer
NA
AA
1491/497
6662-5172
Glutamate--tRNA ligase
SEQF5005|JADGKI010000117.1
SEQF5005_00745
Genome Viewer
NA
AA
1110/370
7860-6751
putative PIN and TRAM-domain containing protein YacL
SEQF5005|JADGKI010000117.1
SEQF5005_00746
Genome Viewer
NA
AA
1371/457
9249-7879
DNA repair protein RadA
SEQF5005|JADGKI010000117.1
SEQF5005_00747
Genome Viewer
NA
AA
537/179
9862-9326
Deoxyuridine 5'-triphosphate nucleotidohydrolase
SEQF5005|JADGKI010000117.1
SEQF5005_00748
Genome Viewer
NA
AA
234/78
10053-10286
hypothetical protein
SEQF5005|JADGKI010000117.1
SEQF5005_00749
Genome Viewer
NA
AA
687/229
10311-10997
Ribose-5-phosphate isomerase A
SEQF5005|JADGKI010000117.1
SEQF5005_00750
Genome Viewer
NA
AA
1335/445
11134-12468
Aminopeptidase C
SEQF5005|JADGKI010000117.1
SEQF5005_00751
Genome Viewer
NA
AA
672/224
13187-12516
2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase
SEQF5005|JADGKI010000117.1
SEQF5005_00752
Genome Viewer
NA
AA
1371/457
14650-13280
hypothetical protein
SEQF5005|JADGKI010000117.1
SEQF5005_00753
Genome Viewer
NA
AA
1128/376
14879-16006
Biofilm regulatory protein A
SEQF5005|JADGKI010000117.1
SEQF5005_00754
Genome Viewer
NA
AA
1224/408
17692-16469
hypothetical protein
SEQF5005|JADGKI010000117.1
SEQF5005_00755
Genome Viewer
NA
AA
981/327
18840-17860
3-oxoacyl-[acyl-carrier-protein] synthase 3
SEQF5005|JADGKI010000117.1
SEQF5005_00757
Genome Viewer
NA
AA
444/148
19552-19109
Protein SprT-like protein
SEQF5005|JADGKI010000117.1
SEQF5005_00758
Genome Viewer
NA
AA
2184/728
21728-19545
Protein YhgF
SEQF5005|JADGKI010000117.1
SEQF5005_00759
Genome Viewer
NA
AA
1776/592
21855-23630
ATP-dependent DNA helicase RecQ
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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